What is a model?
A graphical model represents the relationships and dependencies between model paramters
good_shots <- rnorm(n= 100, mean= 0, sd = 1)
hist(good_shots, main="Archer arrow shots", xlab = "Inches from bullseye")
bad_shots <- rnorm(n= 100, mean= 0, sd = 3)
hist(bad_shots, main="Archer arrow shots", xlab = "Inches from bullseye")
Pr( data | model )
I'm going to make the case that this framework enables radical transparency in both research and pedagogy.
Yang (1994) demonstrated that modeling ASRV as Gamma distributed with 4 Gamma categories is sufficient
Implies many low- or zero-rate characters
It wouldn't be unfair to say there are some things about RevBayes that are more complex than other phylogenetic softwares
Each one is available as a markdown file on the website repository
You see an analysis you like? Clone it!
Integrate with various other R packages, like Bookdown, to generate a flexible living textbook for your systematics class!
bookdown::render_book("RB_MCMC_Discrete_Morph.Rmd", "bookdown::gitbook")
We also have the RevKernel, and a set of RevNotebooks ready to go for the Pythonistas.